LCMSFeatureFinder 1.0.0

Battelle Memorial Institute – Shareware

Revolutionizing Liquid Chromatography Data Analysis

David Fischer

01/29/2025

LCMSFeatureFinder by Battelle Memorial Institute offers powerful tools for parsing complex liquid chromatography mass spectrometry data, significantly enhancing analytical accuracy and efficiency.

LCMSFeatureFinder is a software tool developed by Battelle Memorial Institute for the analysis of liquid chromatography-mass spectrometry (LC-MS) data. The tool aims to identify and quantify molecular features across large LC-MS datasets, which can be used to interpret complex biological samples.

The software utilizes a unique algorithm to deconvolute overlapping mass spectrometry peaks and assign them to individual features.
LCMSFeatureFinder allows users to perform peak detection, alignment, and integration on both high and low-resolution LC-MS data.
The tool also includes advanced statistical and quality control features for identifying significant molecular features and reducing false-positive identifications.
LCMSFeatureFinder can output data in various formats, including comma-separated values (CSV) and mzData, making it compatible with common downstream analysis software.

LCMSFeatureFinder is a powerful tool for the analysis of LC-MS data that can aid in the discovery of new biomarkers, metabolites, and other molecules of interest in complex biological samples.

Overview

LCMSFeatureFinder is a Shareware software in the category Miscellaneous developed by Battelle Memorial Institute.

The latest version of LCMSFeatureFinder is 1.0.0, released on 02/18/2008. It was initially added to our database on 10/29/2007.

LCMSFeatureFinder runs on the following operating systems: Windows.

LCMSFeatureFinder has not been rated by our users yet.

Pros

LCMSFeatureFinder by Battelle Memorial Institute is a powerful tool for analyzing liquid chromatography-mass spectrometry data.
It offers advanced features for detecting and quantifying molecular features in complex samples.
The software allows for accurate peak picking and retention time alignment, facilitating identification of compounds in LC-MS datasets.
It provides options for visualizing data in various formats to aid in interpretation and analysis.
LCMSFeatureFinder has a user-friendly interface that makes it accessible to both novices and experienced users in the field of mass spectrometry.
The software is continuously updated and supported by Battelle Memorial Institute, ensuring users have access to the latest features and improvements.

Cons

LCMSFeatureFinder may have a steep learning curve for users who are new to mass spectrometry analysis.
The software license may come with a high cost, particularly for academic or individual users on limited budgets.
Technical support for troubleshooting and training may be limited or require additional fees.
Compatibility with certain instrument formats or data types may be lacking, limiting its use for some researchers.
The software may require significant computational resources, including memory and processing power, to run efficiently on large datasets.

FAQ

What is LCMSFeatureFinder?

LCMSFeatureFinder is a software developed by Battelle Memorial Institute for automated analysis of data from liquid chromatography-mass spectrometry (LC-MS) experiments. It aims to identify and quantify chemical compounds present in complex samples.

How does LCMSFeatureFinder work?

LCMSFeatureFinder uses advanced algorithms and statistical methods to process LC-MS data. It first detects individual features (peaks) representing chemical compounds in the data. These features are then aligned across multiple samples to account for retention time shifts. Finally, the software performs peak picking, intensity estimation, and compound identification using a combination of databases and spectral matching.

What types of LC-MS data can LCMSFeatureFinder handle?

LCMSFeatureFinder is designed to handle various types of LC-MS data, including both targeted and untargeted experiments. It can process data acquired in positive or negative ionization modes and supports different chromatographic separation techniques (e.g., reversed-phase, normal phase).

Can LCMSFeatureFinder handle complex sample matrices?

Yes, LCMSFeatureFinder is specifically designed to handle complex sample matrices commonly encountered in environmental and biomedical research. It incorporates noise reduction techniques, background subtraction, and sophisticated peak detection algorithms to accurately identify features even in the presence of interfering compounds.

What output does LCMSFeatureFinder provide?

LCMSFeatureFinder generates comprehensive reports containing information about identified chemical compounds such as retention time, peak intensity, mass-to-charge ratio (m/z), and spectral matching scores. It also provides statistical summaries, visualization tools, and export options for seamless integration with downstream data analysis workflows.

Is LCMSFeatureFinder only available for Windows?

Yes, currently LCMSFeatureFinder is only available as a Windows application. However, compatibility with other operating systems may be considered in future updates.

Is LCMSFeatureFinder a commercial or open-source software?

LCMSFeatureFinder is a commercial software developed and licensed by Battelle Memorial Institute.

Is there a trial version of LCMSFeatureFinder available?

Yes, Battelle Memorial Institute offers a trial version of LCMSFeatureFinder for evaluation purposes. It allows users to explore the software's capabilities before deciding on a full license.

Does LCMSFeatureFinder offer batch processing or automation features?

Yes, LCMSFeatureFinder supports batch processing of multiple LC-MS datasets and offers automation features. This enables high-throughput analysis and integration into automated workflows.

Where can I find support or documentation for LCMSFeatureFinder?

Documentation and support for LCMSFeatureFinder can be accessed through Battelle Memorial Institute's official website. They provide detailed user manuals, tutorial videos, and contact information for technical assistance.

David Fischer

I am a technology writer for UpdateStar, covering software, security, and privacy as well as research and innovation in information security. I worked as an editor for German computer magazines for more than a decade before joining the UpdateStar team. With over a decade of editorial experience in the tech industry, I bring a wealth of knowledge and expertise to my current role at UpdateStar. At UpdateStar, I focus on the critical areas of software, security, and privacy, ensuring our readers stay informed about the latest developments and best practices.

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